Package: GARCOM 1.2.2

GARCOM: Gene and Region Counting of Mutations ("GARCOM")

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.

Authors:Sanjeev Sariya [aut, cre, cph], Giuseppe Tosto [aut, cph]

GARCOM_1.2.2.tar.gz
GARCOM_1.2.2.zip(r-4.5)GARCOM_1.2.2.zip(r-4.4)GARCOM_1.2.2.zip(r-4.3)
GARCOM_1.2.2.tgz(r-4.4-any)GARCOM_1.2.2.tgz(r-4.3-any)
GARCOM_1.2.2.tar.gz(r-4.5-noble)GARCOM_1.2.2.tar.gz(r-4.4-noble)
GARCOM_1.2.2.tgz(r-4.4-emscripten)GARCOM_1.2.2.tgz(r-4.3-emscripten)
GARCOM.pdf |GARCOM.html✨
GARCOM/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/complexgenome/garcom/issues

On CRAN:

geneticsmutation

4 exports 0.63 score 34 dependencies 2 scripts 243 downloads

Last updated 2 years agofrom:53ad17a654. Checks:OK: 7. Indexed: yes.

Exports:gene_annot_countsgene_pos_countsvcf_counts_annotvcf_counts_SNP_genecoords

Dependencies:apecliclusterdata.tabledigestdplyrfansigenericsgluelatticelifecyclemagrittrMASSMatrixmemusemgcvnlmepermutepillarpinfsc50pkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vcfRvctrsveganviridisLitewithr