Package: GARCOM
Type: Package
Title: Gene and Region Counting of Mutations ("GARCOM")
Version: 1.2.2
Authors@R: c(person("Sanjeev","Sariya",
           role = c("aut", "cre","cph"),email = "sanjeevsariya@gmail.com"),person("Giuseppe","Tosto", role =c("aut","cph")))
Description: Gene and Region Counting of Mutations (GARCOM) package
        computes mutation (or alleles) counts per gene per individuals
        based on gene annotation or genomic base pair boundaries. It
        comes with features to accept data formats in plink(.raw) and
        VCF. It provides users flexibility to extract and filter
        individuals, mutations and genes of interest.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports: data.table (>= 1.12.8), stats, vcfR (>= 1.12.0)
Suggests: testthat
Depends: R (>= 3.5.0)
Config/pak/sysreqs: libicu-dev
Repository: https://complexgenome.r-universe.dev
Date/Publication: 2022-12-23 11:37:19 UTC
RemoteUrl: https://github.com/complexgenome/garcom
RemoteRef: HEAD
RemoteSha: 53ad17a654c71ddbc6aacbf9065d2b736c3855fd
NeedsCompilation: no
Packaged: 2026-10-10 14:13:08 UTC; root
Author: Sanjeev Sariya [aut, cre, cph],
  Giuseppe Tosto [aut, cph]
Maintainer: Sanjeev Sariya <sanjeevsariya@gmail.com>